Publications

Shen, F., Huang, Z., Zhang, B., Wang, Y., Zhang, X., Wu, T., Xu, X., Zhang, X., & Han, Z. (2019). Mapping gene markers for apple fruit ring rot disease resistance using a multi-omics approach. G3: Genes, Genomes, Genetics, 9(5), 1663–1678.

Cui, M., Zhuang, Y., Shen, F., Yang, L., Wang, Y., Wu, T., Zhao, Y., Li, C., Han, Y., Chen, D., & others. (2014). QTL mapping for susceptibility to apple fruit ring rot and candidate gene predicting. Journal of Fruit Science, 31(5), 793–800.

Tan, Y., Shen, F., Chen, R., Wang, Y., Wu, T., Li, T., Xu, X., Han, Z., & Zhang, X. (2017). Candidate genes associated with resistance to Valsa canker identified via quantitative trait loci in apple. Journal of Phytopathology, 165(11–12), 848–857.

Zhao, J.#, Shen, F.#, Gao, Y., Wang, D., & Wang, K. (2019). Parallel Bud Mutation Sequencing Reveals that Fruit Sugar and Acid Metabolism Potentially Influence Stress in Malus. International Journal of Molecular Sciences, 20(23), 5988.

Huang, Z#., Shen, F.#, Chen, Y., Cao, K., & Wang, L. (2021). Preliminary Identification of Key Genes Controlling Peach Pollen Fertility Using Genome-Wide Association Study. Plants, 10(2), 242.

Wei, X.#, Shen, F.#, Zhang, Q., Liu, N., Zhang, Y., Xu, M., Zhang, Y., Ma, X., & Liu, W. (2020). Genetic diversity analysis of Chinese plum (Prunus salicina L.) based on whole-genome resequencing. BioRxiv.

Jia, D., Shen, F., Wang, Y., Wu, T., Xu, X., Zhang, X., & Han, Z. (2018). Apple fruit acidity is genetically diversified by natural variations in three hierarchical epistatic genes: MdSAUR37, MdPP2CH and MdALMTII. The Plant Journal, 95(3), 427–443.

Liu, J., Shen, F., Xiao, Y., Fang, H., Qiu, C., Li, W., Wu, T., Xu, X., Wang, Y., Zhang, X., & others. (2020). Genomics-assisted prediction of salt and alkali tolerances and functional marker development in apple rootstocks. BMC Genomics, 21(1), 1–16.

Yang, F., Shen, F., Liu, Z., He, M., Wang, Y., Wu, T., Xu, X., Li, W., Qiu, C., Zhang, X., & others. (2020). Development and validation of functional markers from Dw1 and Dw2 loci to accurately predict apple rootstock dwarfing ability.

Zheng, W., Shen, F., Wang, W., Wu, B., Wang, X., Xiao, C., Tian, Z., Yang, X., Yang, J., Wang, Y., & others. (2020). Quantitative trait loci-based genomics-assisted prediction for the degree of apple fruit cover color. The Plant Genome, 13(3), e20047.

Li, X., Xu, X., Shen, F., Li, W., Qiu, C., Wu, T., Wang, Y., Xu, X., Han, Z., & Zhang, X. (2020). $γ$-Aminobutyric Acid Participates in the Adult-Phase Adventitious Rooting Recalcitrance. Journal of Plant Growth Regulation, 1–11.

Zheng, C., Shen, F., Wang, Y., Wu, T., Xu, X., Zhang, X., & Han, Z. (2020). Intricate genetic variation networks control the adventitious root growth angle in apple. BMC Genomics, 21(1), 1–18.

Wang, X., Shen, F., Gao, Y., Wang, K., Chen, R., Luo, J., Yang, L., Zhang, X., Qiu, C., Li, W., & others. (2020). Application of genome-wide insertion/deletion markers on genetic structure analysis and identity signature of Malus accessions. BMC Plant Biology, 20(1), 1–13.

Wu, B., Shen, F., Wang, X., Zheng, W. Y., Xiao, C., Deng, Y., Wang, T., Huang, Z. Y., Zhou, Q., Wang, Y., & others. (2020). Role of MdERF3 and MdERF118 natural variations in apple flesh firmness/crispness retainability and development of QTL-based genomics-assisted prediction. Plant Biotechnology Journal.

Wu, B., Shen, F., Chen, C. J., Liu, L., Wang, X., Zheng, W. Y., Deng, Y., Wang, T., Huang, Z. Y., Xiao, C., & others. (2021). Natural variations in a pectin acetylesterase gene, MdPAE10, contribute to prolonged apple fruit shelf life. The Plant Genome, e20084.

Jia, D., Wu, P., Shen, F., Li, W., Zheng, X., Wang, Y., Yuan, Y., Zhang, X., & Han, Z. (2021). Genetic variation in the promoter of an R2R3- MYB transcription factor determines fruit malate content in apple (Malus domestica Borkh.). Plant Physiology.

Huang, Z., Hu, H., Shen, F., Wu, B., Wang, X., Zhang, B., Wang, W., Liu, L., Liu, J., Chen, C., & others. (2018). Relatively high acidity is an important breeding objective for fresh juice-specific apple cultivars. Scientia Horticulturae, 233, 29–37.

Jia, X. L., Chen, Y. K., Xu, X. Z., Shen, F., Zheng, Q. B., Du, Z., Wang, Y., Wu, T., Xu, X. F., Han, Z. H., & others. (2017). miR156 switches on vegetative phase change under the regulation of redox signals in apple seedlings. Scientific Reports, 7(1), 1–13.

Zhang, M., Lv, Y., Wang, Y., Rose, J. K. C., Shen, F., Han, Z., Zhang, X., Xu, X., Wu, T., & Han, Z. (2016). TATA box insertion provide a selected mechanism for enhancing gene expression to adapt Fe deficiency. Plant Physiology, pp–01504.

Zhao, J., Liu, G., Chang, R., Cao, K., Shen, F., Wu, T., Wang, Y., Han, Z., & Zhang, X. (2015). Diversity of flesh polyphenols and their progressive dilution during fruit expansion in Malus germplasm. Scientia Horticulturae, 197, 461–469.

Han, Z., Hu, Y., Lv, Y., Rose, J. K. C., Sun, Y., Shen, F., Wang, Y., Zhang, X., Xu, X., Wu, T., & others. (2018). Natural variation underlies differences in ETHYLENE RESPONSE FACTOR17 activity in fruit peel degreening. Plant Physiology, 176(3), 2292–2304.

Zhang, M., Lv, Y., Wang, Y., Rose, J. K. C., Shen, F., Han, Z., Zhang, X., Xu, X., Wu, T., & Han, Z. (2017). TATA box insertion provides a selection mechanism underpinning adaptations to Fe deficiency. Plant Physiology, 173(1), 715–727.

Wang, W., Mauleon, R., Hu, Z., Chebotarov, D., Tai, S., Wu, Z., Li, M., Zheng, T., Fuentes, R. R., Zhang, F., & others. (2018). Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature, 557(7703), 43–49.

Cao, K., Chang, Y., Sun, R., Shen, F., Wu, T., Wang, Y., Zhang, X., & Han, Z. (2015). Candidate gene prediction via quantitative trait locus analysis of fruit shape index traits in apple. Euphytica, 206(2), 381–391.